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Author SHA1 Message Date
Ricardo Wurmus
d313c91ca4 gnu: r-adbcdrivermanager: Update to 0.23.0-1. 
* gnu/packages/cran.scm (r-adbcdrivermanager): Update to 0.23.0-1.

Change-Id: If0c4562f7eaa8ec2f58e2d93a74017846da4efbc
 2026-04-25 09:10:12 +02:00
Ricardo Wurmus
10f5989bef gnu: r-nestedcv: Update to 0.8.2. 
* gnu/packages/cran.scm (r-nestedcv): Update to 0.8.2.

Change-Id: I40da037fab723d8d9778e0bf03467ea39ba1abf2
 2026-04-25 09:10:12 +02:00
Ricardo Wurmus
875dfe906d gnu: r-nanoparquet: Update to 0.5.0. 
* gnu/packages/cran.scm (r-nanoparquet): Update to 0.5.0.

Change-Id: I1908304c8b3a77d322239abece7497378a5ca1a4
 2026-04-25 09:10:12 +02:00
Ricardo Wurmus
5b974d9c57 gnu: r-vctrs: Update to 0.7.3. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.7.3.

Change-Id: Ica88c39ef10d6a6ac2fc9ca17bf41846a1b2670c
 2026-04-25 09:10:12 +02:00
Ricardo Wurmus
71323d4291 gnu: r-cli: Update to 3.6.6. 
* gnu/packages/cran.scm (r-cli): Update to 3.6.6.

Change-Id: I7cf3345a2fc807cdd589b79bb8b8393e79d75bf0
 2026-04-25 09:10:12 +02:00
Ricardo Wurmus
922751c31a gnu: r-dtw: Update to 1.23-2. 
* gnu/packages/cran.scm (r-dtw): Update to 1.23-2.

Change-Id: I7a719f3a4e5955a19d0918d8b846ae615fa933d4
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
4ed9d64205 gnu: r-performanceanalytics: Update to 2.1.0. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 2.1.0.
[native-inputs]: Remove r-tinytest; add r-e1071, r-testthat, and r-vdiffr.

Change-Id: I23ab8c04708636a83b3f05f3abcab8bc0d7ab6bd
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
b306f54e1b gnu: r-rmysql: Update to 0.11.3. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.11.3.

Change-Id: I9d70f5168182e78843e1efd6183e350789e4becb
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
a836f413d2 gnu: r-littler: Update to 0.3.23. 
* gnu/packages/cran.scm (r-littler): Update to 0.3.23.

Change-Id: Ia74aafe3a91c74f19676f82c9ccdabf9081d957e
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
7385547196 gnu: r-getoptlong: Update to 1.1.1. 
* gnu/packages/cran.scm (r-getoptlong): Update to 1.1.1.

Change-Id: Ibe629b9579fc03a22d2ceaca40db4b41104ed31c
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
1c9ceee410 gnu: r-globaloptions: Update to 0.1.4. 
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.4.

Change-Id: Ieac2a7f703dffb6074c812020bcc96530d50f013
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
1372013463 gnu: r-glue: Update to 1.8.1. 
* gnu/packages/cran.scm (r-glue): Update to 1.8.1.

Change-Id: Id9cabfd419f8f802ae36119ff84d9c2dfba4a261
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
c79fd881a3 gnu: r-webfakes: Update to 1.4.1. 
* gnu/packages/cran.scm (r-webfakes): Update to 1.4.1.

Change-Id: I60ce6d5564417a3fc1cf1d78f3632c5a15e11fe6
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
437196d2c2 gnu: r-mvtnorm: Update to 1.3-7. 
* gnu/packages/cran.scm (r-mvtnorm): Update to 1.3-7.

Change-Id: I2ee129f866fa020bcbbbd6a1ca1b5e4167688f53
 2026-04-25 09:10:11 +02:00
Ricardo Wurmus
dc99b32ba4 gnu: r-sendmailr: Update to 1.4-1. 
* gnu/packages/cran.scm (r-sendmailr): Update to 1.4-1.

Change-Id: I4be9813e4497939a102937987e5138fdede3eb85
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
090db03050 gnu: r-openssl: Update to 2.4.0. 
* gnu/packages/cran.scm (r-openssl): Update to 2.4.0.

Change-Id: If0c740954f0b5629d479b1b8b66e4f5acdff2775
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
8da7b67a6a gnu: r-zcompositions: Update to 1.6.1. 
* gnu/packages/cran.scm (r-zcompositions): Update to 1.6.1.

Change-Id: I3aece7d38644752b7b33fa72350b90ac461c12ee
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
39cfc5859a gnu: r-v8: Update to 8.1.0. 
* gnu/packages/cran.scm (r-v8): Update to 8.1.0.

Change-Id: I004126d4068de7785493b931c26cc69f529a9e21
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
dd336b07b6 gnu: r-purrr: Update to 1.2.2. 
* gnu/packages/cran.scm (r-purrr): Update to 1.2.2.

Change-Id: I6dc49aa59af99ef3214cc107dc47a3f2ef29f84f
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
dcc3073518 gnu: r-pak: Update to 0.9.4. 
* gnu/packages/cran.scm (r-pak): Update to 0.9.4.

Change-Id: I17bd495432b955538b1f4d66c2801fd82714044c
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
901c12995f gnu: r-epir: Update to 2.0.92. 
* gnu/packages/cran.scm (r-epir): Update to 2.0.92.

Change-Id: I96aedd8013561241c6b6a2338d287a6a7c08a61c
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
b18c59181f gnu: r-devtools: Update to 2.5.1. 
* gnu/packages/cran.scm (r-devtools): Update to 2.5.1.

Change-Id: Ie3aa9bccab125526599442686b2e8fc9f8ccd7df
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
ed1a446dd1 gnu: r-countrycode: Update to 1.8.0. 
* gnu/packages/cran.scm (r-countrycode): Update to 1.8.0.

Change-Id: Ieffa36027985e51f0199a65e31bc0a9a0ea5299d
 2026-04-25 09:10:10 +02:00
Ricardo Wurmus
a3de3fb539 gnu: r-colorramp2: Update to 0.1.1. 
* gnu/packages/cran.scm (r-colorramp2): Update to 0.1.1.

Change-Id: I3a0c42c07c51204354ea9ec4e4c5b50069408381
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
2b9a24f3e2 gnu: r-box: Update to 1.2.2. 
* gnu/packages/cran.scm (r-box): Update to 1.2.2.

Change-Id: I6788163ed22a02c24921eedaf510cd1abed028fb
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
75facc15e4 gnu: r-ggpicrust2: Update to 2.5.12. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 2.5.12.

Change-Id: Ie625e6082c6e6ff615e5655ef4e99f92d968f574
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
39c2d6972e gnu: r-samr: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-samr): Update to 3.0.1.

Change-Id: Ia662ec72bbd8c9c28c954e5a57137b14d9627def
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
817b0025e4 gnu: Add r-gaupro. 
* gnu/packages/cran.scm (r-gaupro): New variable.

Change-Id: I65995b68c25c12b58bc718d74d2d40f7fc7327f9
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
03e08b31a5 gnu: Add r-mixopt. 
* gnu/packages/cran.scm (r-mixopt): New variable.

Change-Id: Ie9e8be903bfac9a1f8b0547b98a26d5e98445ed4
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
6ca3b91197 gnu: Add r-contourfunctions. 
* gnu/packages/cran.scm (r-contourfunctions): New variable.

Change-Id: Ib05b992fcff568c1c9f16191784d8c76bea80502
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
4e58448c97 gnu: Add r-xmlrpc2. 
* gnu/packages/cran.scm (r-xmlrpc2): New variable.

Change-Id: Ifab09184f73ff1bb7dbfac11426a2b0126c095d7
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
c22e252974 gnu: r-optparse: Update to 1.8.2. 
* gnu/packages/cran.scm (r-optparse): Update to 1.8.2.
[properties]: Remove updater-extra-native-inputs.
[propagated-inputs]: Remove r-getopt.
[native-inputs]: Add r-rmarkdown.

Change-Id: I6da35779b7fcf10e25db70de0e422ced2dcb8b4f
 2026-04-25 09:10:09 +02:00
Ricardo Wurmus
8a5607e465 gnu: Add r-splitfngr. 
* gnu/packages/cran.scm (r-splitfngr): New variable.

Change-Id: Ica529377b0db12028df20109c0832da878147865
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
8f23760c67 gnu: Add r-lbfgs. 
* gnu/packages/cran.scm (r-lbfgs): New variable.

Change-Id: Ibcb6730d72419673214c35c3d025b7934653f5b4
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
c2adfe58d1 gnu: Add r-testthatmulti. 
* gnu/packages/cran.scm (r-testthatmulti): New variable.

Change-Id: Ie52b482dee3645f2c899968b022a8b4af5b5c7fe
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
d32ce31427 gnu: r-detectseparation: Update to 0.4.0. 
* gnu/packages/cran.scm (r-detectseparation): Update to 0.4.0.
[propagated-inputs]: Add r-roi-plugin-alabama, r-roi-plugin-ecos,
r-roi-plugin-glpk, and r-roi-plugin-neos.
[native-inputs]: Add r-tinytest.

Change-Id: I163baa560b16103e5c7393e36e9d914e238a336f
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
8623a61a91 gnu: Add r-roi-plugin-neos. 
* gnu/packages/cran.scm (r-roi-plugin-neos): New variable.

Change-Id: Ic9dff65cf7a6fb0b8decc8f298cba03de5ed2a3f
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
8966269737 gnu: Add r-roi-plugin-glpk. 
* gnu/packages/cran.scm (r-roi-plugin-glpk): New variable.

Change-Id: I7494d76df73a9c367e8897362acea174bb1629b4
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
f58c133c4b gnu: Add r-roi-plugin-ecos. 
* gnu/packages/cran.scm (r-roi-plugin-ecos): New variable.

Change-Id: Ie7830147d142873a526b495cc6b1d6b4362816e8
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
392dcd7989 gnu: Add r-roi-plugin-alabama. 
* gnu/packages/cran.scm (r-roi-plugin-alabama): New variable.

Change-Id: If92353f459bf8ec46a8c46895f8a15683cca6c41
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
e3e6936809 gnu: openjdk25: Enable build of i686 variant. 
* gnu/packages/java.scm (openjdk25)[arguments]: Conditionally add configure
flags to enable i686 port; conditionally replace 'install and 'install-libjvm
phases.

Change-Id: Ie436812341a4b02f61034c5142f396d16f3da17f
 2026-04-25 09:10:08 +02:00
Ricardo Wurmus
140ccc7792 gnu: openjdk24: Enable build of i686 variant. 
* gnu/packages/java.scm (openjdk24)[arguments]: Conditionally add configure
flag to enable i686 port.

Change-Id: Ib24d64d0dfb0e75ad6e1311a00cb8532d367b132
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
9ddb18d987 gnu: openjdk10: Conditionally disable C2 compiler when importing certificates. 
* gnu/packages/java.scm (openjdk10)[arguments]: Conditionally add phase
'disable-C2-compiler on 32-bit x86.

Change-Id: Id8a90deb686cb1354c53faac11b91af098e83f6e
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
a5ed9dd345 gnu: ant-bootstrap: Add hack to build on i686. 
* gnu/packages/java-bootstrap.scm (ant-bootstrap)[arguments]: Conditionally
patch isFile checks.

Change-Id: If09594e301dc4691f564e197499acc7d7af71706
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
1d662cdc9b gnu: r-seurat: Conditionally skip a test on 32-bit platforms. 
* gnu/packages/cran.scm (r-seurat)[arguments]: On 32-bit platforms skip a
test.

Change-Id: I9c5eb3faed4bd3695fe81200447f201aa8081228
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
4f19c2047b gnu: r-bpcells: Build with SSE2 for on x86 32-bit platforms. 
* gnu/packages/bioinformatics.scm (r-bpcells)[arguments]: Conditionally add
phase 'require-sse2.

Change-Id: I4927d9701e47dc34cc435d24c64a3043ad984f0d
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
ef2a17eaa1 gnu: r-bpcells: Update to 0.3.1. 
* gnu/packages/bioinformatics.scm (r-bpcells): Update to 0.3.1.
[arguments]: Do not patch r/configure.

Change-Id: Ia16297dc02bfecaf353de04452026df98ea5c826
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
0966f32ee8 gnu: r-actuar: Conditionally skip some tests on 32-bit platforms. 
* gnu/packages/cran.scm (r-actuar)[arguments]: On 32-bit platforms skip some
tests.

Change-Id: Iad305e0819f919ace9ab9fe7d20357981e2a226a
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
2e7bb0adab gnu: r-expint: Conditionally skip test on 32-bit platforms. 
* gnu/packages/cran.scm (r-expint)[arguments]: On 32-bit platforms skip one
test.

Change-Id: Ifa97d90cfcf65fbdb9c920515f32c383c61d1ae6
 2026-04-25 09:10:07 +02:00
Ricardo Wurmus
7c659af74e gnu: r-lme4: Conditionally skip test on 32-bit platforms. 
This is really questionable.  The test suite freezes in several places on
i686-linux, and it's not clear why.  It would be preferable to identify the
cause and fix that for good, but perhaps we can revisit this once the state of
R on i686-linux has improved.

* gnu/packages/cran.scm (r-lme4)[arguments]: On 32-bit platforms skip several
tests.

Change-Id: I67e963ec29cb00f66c122817898f0c6db330307f
 2026-04-25 09:10:07 +02:00