Add r-base container

This commit is contained in:
taosy
2019-12-10 21:46:07 -05:00
committed by qzheng527
parent cebabbf7ea
commit 9ea289fb8f
3 changed files with 141 additions and 0 deletions
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FROM clearlinux:latest AS builder
ARG swupd_args
# Move to latest Clear Linux release to ensure
# that the swupd command line arguments are
# correct
RUN swupd update --no-boot-update $swupd_args
# Grab os-release info from the minimal base image so
# that the new content matches the exact OS version
COPY --from=clearlinux/os-core:latest /usr/lib/os-release /
# Install additional content in a target directory
# using the os version from the minimal base
RUN source /os-release && \
mkdir /install_root \
&& swupd os-install -V ${VERSION_ID} \
--path /install_root --statedir /swupd-state \
--bundles=os-core-update,R-basic --no-boot-update
# For some Host OS configuration with redirect_dir on,
# extra data are saved on the upper layer when the same
# file exists on different layers. To minimize docker
# image size, remove the overlapped files before copy.
RUN mkdir /os_core_install
COPY --from=clearlinux/os-core:latest / /os_core_install/
RUN cd / && \
find os_core_install | sed -e 's/os_core_install/install_root/' | xargs rm -d &> /dev/null || true
FROM clearlinux/os-core:latest
COPY --from=builder /install_root /
CMD ["R"]
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# Clear Linux* OS `r-base` container image
<!-- Required -->
## What is this image?
`clearlinux/r-base` is a Docker image with `r-base` running on top of the
[official clearlinux base image](https://hub.docker.com/_/clearlinux).
<!-- application introduction -->
> [R](https://www.r-project.org/) is a language and environment for statistical computing and graphics. It is a GNU project which is similar to the S language and environment which was developed at Bell Laboratories (formerly AT&T, now Lucent Technologies) by John Chambers and colleagues. R can be considered as a different implementation of S. There are some important differences, but much code written for S runs unaltered under R.
For other Clear Linux* OS
based container images, see: https://hub.docker.com/u/clearlinux
## Why use a clearlinux based image?
<!-- CL introduction -->
> [Clear Linux* OS](https://clearlinux.org/) is an open source, rolling release
> Linux distribution optimized for performance and security, from the Cloud to
> the Edge, designed for customization, and manageability.
Clear Linux* OS based container images use:
* Optimized libraries that are compiled with latest compiler versions and
flags.
* Software packages that follow upstream source closely and update frequently.
* An aggressive security model and best practices for CVE patching.
* A multi-staged build approach to keep a reduced container image size.
* The same container syntax as the official images to make getting started
easy.
To learn more about Clear Linux* OS, visit: https://clearlinux.org.
<!-- Required -->
## Deployment:
### Deploy with Docker
The easiest way to get started with this image is by simply pulling it from
Docker Hub.
*Note: This container uses the same syntax as the [official r-base image](https://hub.docker.com/_/r-base).
1. Pull the image from Docker Hub:
```
docker pull clearlinux/r-base
```
2. Start a container using the examples below:
```
docker run -it clearlinux/r-base
```
3. Start a container and run a R script:
```
docker run --rm -v $PWD:/app clearlinux/r-base Rscript /app/sample.R
```
<!-- Optional -->
### Deploy with Kubernetes
<!-- Required -->
## Build and modify:
The Dockerfiles for all Clear Linux* OS based container images are available at
https://github.com/clearlinux/dockerfiles. These can be used to build and
modify the container images.
1. Clone the clearlinux/dockerfiles repository.
```
git clone https://github.com/clearlinux/dockerfiles.git
```
2. Change to the directory of the application:
```
cd r-base/
```
3. Build the container image:
```
docker build -t clearlinux/r-base .
```
4. Please refer to [create custom application container image](https://docs.01.org/clearlinux/latest/guides/maintenance/container-image-modify.html) on how to customize your container image with specific debug capabilities, such as: make, git.
Refer to the Docker documentation for [default build arguments](https://docs.docker.com/engine/reference/builder/#arg).
Additionally:
- `swupd_args` - specifies arguments to pass to the Clear Linux* OS software
manager. See the [swupd man pages](https://github.com/clearlinux/swupd-client/blob/master/docs/swupd.1.rst#options)
for more information.
<!-- Required -->
## Licenses
All licenses for the Clear Linux* Project and distributed software can be found
at https://clearlinux.org/terms-and-policies
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#!/bin/bash
. ../docker-hooks.sh
image="clearlinux/r-base"
package=R
do_tag $image $package