From 340c52678f3651da03fbc8d4da3a73cfe0d440f3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 25 Nov 2025 13:48:17 +0100 Subject: [PATCH] gnu: r-txdbmaker: Update to 1.6.0. * gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.0. [propagated-inputs]: Add r-seqinfo. [native-inputs]: Add r-genomeinfodbdata. Change-Id: If4a6489cd6b23429d7351dd7e2c3687b757a174c --- gnu/packages/bioconductor.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 441b4b15fc7..0b6d763d04c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14921,13 +14921,13 @@ dependencies between GO terms can be implemented and applied.") (define-public r-txdbmaker (package (name "r-txdbmaker") - (version "1.4.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (bioconductor-uri "txdbmaker" version)) (sha256 - (base32 "0yfdm8v371mr76mxwbs8gc8bxnh5l9hpsrm9n7j2z1ipz4rn8scj")))) + (base32 "0rczknnbccc2vlbs0mkv89fqmr1myxjba12dvvyqfpnh7pcxfihp")))) (properties '((upstream-name . "txdbmaker") (updater-extra-native-inputs . ("r-runit")))) @@ -14957,8 +14957,9 @@ dependencies between GO terms can be implemented and applied.") r-rsqlite r-rtracklayer r-s4vectors + r-seqinfo r-ucsc-utils)) - (native-inputs (list r-knitr r-runit)) + (native-inputs (list r-genomeinfodbdata r-knitr r-runit)) (home-page "https://bioconductor.org/packages/txdbmaker") (synopsis "Tools for making TxDb objects from genomic annotations") (description